what path settings does matlab 2018b require

Validating cell extraction with viewCellExtractionOnMovie.Loading cell-extraction output data with modelVarsFromFiles.Extracting cells with modelExtractSignalsFromMovie.Manual movie cropping with modelModifyMovies.Preprocessing calcium imaging movies with modelPreprocessMovie.Check movie registration before pre-processing with viewMovieRegistrationTest.Supports reading NWB movie files (write support coming soon).Ĭontact: Biafra Ahanonu, PhD (bahanonu alum mit edu). outputs of PCA-ICA, CELLMax, CNMF, CNMF-E, etc.). Supports Neurodata Without Borders data standard (see calcium imaging tutorial) for reading/writing cell-extraction (e.g.Includes code for determining animal position (e.g.Has several example calcium imaging datasets that it will automatically download to help users test out the package.Includes all major calcium imaging analysis steps: pre-processing (motion correction, spatiotemporal downsampling, spatial filtering, relative fluorescence calculation, etc.), support for multiple cell-extraction methods, automated cell classification (coming soon!), cross-session cell alignment, and more.Functions located in ciapkg and +ciapkg sub-folders.

The underlying functions can also be used to create GUI-less, command line-ready analysis pipelines.Includes a GUI to allow users to do large-scale batch analysis, accessed via the repository's CIAtah class.Software package for calcium imaging analysis of one- and two-photon imaging datasets. Note: in general use the individual pages in the navigation pane on the left, as those will be most up-to-date.

What path settings does matlab 2018b require